Research Index
Labs
COA 690/790 Special Topics: Introduction to Cladistics
Week 1
Classification and relationship: The Caminacules
Week 2
Finding data on the internet
Week 3
BLAST searches, aligning data with ClustalX and Se-Al
Week 4
Tree building: Maximum parsimony using PAUP*
Week 5
Tree building: Maximum parsimony using PAUP*
Week 6
Tree building: Maximum likelihood using PAUP*
Week 7
Tree building: Maximum likelihood using PAUP*
Week 8
Tree building: Bayesian analysis using MrBayes
Week 9
Tree building: Bayesian analysis using MrBayes
Week 10
Tree length, tree scores, parametric tests (K-H, S-H), consensus trees, agreement subtrees
Week 11
Bootstrap, Jack-knife, decay index, Bayesian posterior probabilities
Week 12
Incongruence Length Difference, partition homogeneity test, percent clades correct measure
Week 13
MacClade
Week 14
Making a Figure with PowerPoint
